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en:links_to_databases [2013/06/09 10:10] (current)
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 +======Direct query=====
 +
 +{{pubchem>​searchbox}}
 +
 +
 +{{pdb>​searchbox}}
 +
 +
 +======Genome======
 +  ***UCSC Genome Browser**
 +    *[[http://​genome.ucsc.edu/​index.html|UCSC Genome Browser]]
 +  ***US Department of Energy Joint Genome Institute**
 +    *[[http://​genome.jgi-psf.org/​|Eukaryotic Genomics]]
 +  ***Washington University School of Medicine**
 +    *[[http://​genome.wustl.edu/​|Genome Sequencing Center]]
 +  ***Well Come Trust Sanger Institute**
 +    *[[http://​www.sanger.ac.uk/​|Sanger Institute]]
 +  ***Broad Institute at MIT**
 +    *[[http://​www.broad.mit.edu/​|Broad Institute]]
 +    *[[http://​www.broad.mit.edu/​tools/​data.html|Broad Insitute Data]]
 +  ***理化学研究所 (RIKEN, Japan)**
 +    *[[http://​www.gsc.riken.go.jp/​jpn/​database/​index.html|ゲノム科学総合研究センター]]
 +
 +
 +**Homo sapiens**\\ ​
 +  *[[http://​www.ncbi.nlm.nih.gov/​genome/​guide/​human/​|NCBI Human Genome Resources]]
 +  *[[http://​compbio.ornl.gov/​channel/​index.html|Oak Ridge National Laboratory Genome Channel]]
 +  *[[http://​www.hgsc.bcm.tmc.edu/​|Baylor College of Medicine Human Genome Sequencing Center]]
 +  *[[http://​www.sanger.ac.uk/​HGP/​|Sanger Institute Human Genome Project]]
 +  *[[http://​projects.tcag.ca/​humandup/​|Human Genome Segmental Duplication Database]]
 +  *[[http://​humanparalogy.gs.washington.edu/​SDD/​index.htm|University of Washington Segmental Duplication DB]]
 +
 +
 +**Fish**\\ ​
 +  *[[http://​www.fugu-sg.org/​|Fugu Genome Project]]
 +  *[[http://​genome.jgi-psf.org/​Takru4/​Takru4.home.html|JGI Fugu rubripes]]
 +  *[[http://​fugu.biology.qmul.ac.uk/​|Queen Mary University of London Fugu Genomics Project]]
 +  *[[http://​www.genoscope.cns.fr/​externe/​tetranew/​|Tetraodon Genome Browser]]
 +  *[[http://​www.ncbi.nlm.nih.gov/​genome/​guide/​zebrafish/​|NCBI Zebrafish Genome Resources]]
 +  *[[http://​www.sanger.ac.uk/​Projects/​D_rerio/​|Sanger Institute Danio rerio Sequencing Project]]
 +  *[[http://​zfish.wustl.edu/​|Washington University Zebrafish Genome Resources]]
 +  *[[http://​zebrafish.stanford.edu/​genome/​Frontpage.html|Stanford Zebrafish Genome Project]]
 +  *[[http://​zfin.org/​|The Zebrafish Information Network]]
 +  *[[http://​big.nyp.edu.sg/​zpcr/​servlet/​index|Automatic Zebrafish-specific PCR primer design service]]
 +  *[[http://​134.174.23.160/​zfaca/​hash/​master020106public.aspx|Zebrafish Affy Chip Annotation Project]]
 +  *[[http://​zgc.nci.nih.gov/​|Zebrafish Gene Collection]]
 +
 +
 +**Drosophila**\\ ​
 +  *[[http://​www.flybase.org/​|Flybase]]
 +  *[[http://​rana.lbl.gov/​drosophila/​|AAA:​ 12 Drosophila Genomes]]
 +  *[[http://​www.fruitfly.org/​|BDGP:​ Berkeley Drosophila Genome Project]]
 +
 +
 +
 +**Extra**\\ ​
 +  -[[http://​eichlerlab.gs.washington.edu/​database.html|University of Washington Eichler Lab Segmental Duplication Database]]
 +
 +
 +
 +======Tree of Life======
 +[[http://​tolweb.org/​tree/​phylogeny.html|{{bio:​tol_toppage.jpg?​200}}]]
 +**[[http://​tolweb.org/​tree/​phylogeny.html|Tree of Life web project]]**\\ \\ 
 +
 +//The Tree of Life Web Project (ToL) is a collaborative effort of biologists from around the world. On more than 9000 World Wide Web pages, the project provides information about the diversity of organisms on Earth, their evolutionary history (phylogeny),​ and characteristics.//​
 +
 +
 +======Protein======
 +  *[[http://​www.wwpdb.org/​|Protein Data Bank]]
 +  *[[http://​www.brenda.uni-koeln.de/​|Enzyme Database - BRENDA]]
 +
 +=====Restriction enzymes=====
 +  *[[http://​rebase.neb.com/​rebase/​rebase.html|REBASE]] by NEB
 +
 +=====Protein-protein interaction=====
 +  * [[http://​dip.doe-mbi.ucla.edu/​|DIP]]
 +  * [[http://​www.thebiogrid.org/​|BioGRID]]
 +  * [[http://​www.hprd.org/​|HPRD]]
 +  * [[http://​bond.unleashedinformatics.com/​Action?​|BIND]] (Unified to '​BOND'​)
 +
 +=====Pathway=====
 +  * [[http://​www.genome.ad.jp/​kegg/​|KEGG]]
 +  * [[http://​www.reactome.org/​|Reactome]]
 +  * [[http://​www.pathwaycommons.org/​pc/​|Pathway Commons]]\\ Integrated several databases of pathways.
 +
 +{{tag>​Database}}